Subprogram basic_mod::input: to be moved in the correct place
Subprogram basic_mod::input_file: to be moved in the correct place
Subprogram basic_mod::mpi_env: to be moved in the correct place
Subprogram diagnose_mod::endrun: Seems more error prone than not doing anything at all...
Subprogram input_reader_mod::check_input_consistency (input): to be refactored
Subprogram numerics_mod::no_boussinesq_vorticity_terms: Management of ghosts is ad-hoc, lots of communication, lots of copy-pasted code
Subprogram run_controller_mod::control_run (): Auxval timers are now useless, should time initialize_modules instead.
Subprogram sources_mod::initialize_sources (input_model): The {omega,vpar[ei]}_source* arrays are currently allocated and initialized but do not enter the RHS equation modules.
Subprogram space_grid_mod::set_zgrid (mpi_env): This should be checked at the beginning of the run
Subprogram verification_mod::save_errors (fidres, iord3d): This routine is an output routine. It would be a better fit inside the diagnose_mod module.